| Title | Artist | Time | ||
|---|---|---|---|---|
| 1 | Theme of Phantom R | SEGA & Tomoya Ohtani | 3:33 | |
| 2 | The Story So Far… | SEGA & Tomoya Ohtani | 1:02 | |
| 3 | The Mystère Incident | SEGA & Takahito Eguchi | 0:59 | |
| 4 | Enter Raphael | SEGA, Takahito Eguchi & Tomoya Ohtani | 1:35 | |
| 5 | Phantom R | SEGA & Tomoya Ohtani | 0:12 | |
| 6 | Showtime | SEGA & Naofumi Hataya | 2:32 | |
| 7 | Rhythm Game Clear | SEGA & Tomoya Ohtani | 0:11 | |
| 8 | The Secret of the Mark | SEGA & Takahito Eguchi | 0:41 | |
| 9 | Paris at Night | SEGA & Tomoya Ohtani | 1:50 | |
| 10 | Puzzle Game | SEGA & Naofumi Hataya | 0:58 | |
| 11 | Puzzle Game Clear | SEGA & Naofumi Hataya | 0:07 | |
| 12 | Breaking In | SEGA & Naofumi Hataya | 1:00 | |
| 13 | Looting the Louvre | SEGA & Naofumi Hataya | 1:56 | |
| 14 | Time Limit | SEGA & Naofumi Hataya | 0:53 | |
| 15 | Inspector Vergier | SEGA & Takahito Eguchi | 1:03 | |
| 16 | Le Getaway | SEGA & Tomoya Ohtani | 1:58 | |
| 17 | Paris by Day | SEGA & Naofumi Hataya | 1:56 | |
| 18 | Meeting Marie | SEGA & Takahito Eguchi | 0:58 | |
| 19 | Theme of Napoleon | SEGA & Takahito Eguchi | 1:21 | |
| 20 | Battle Diabolique | SEGA & Tomoya Ohtani | 1:43 | |
| 21 | Phantom R Makes Himself Scarce | SEGA & Tomoya Ohtani | 0:58 | |
| 22 | Chapter | SEGA & Tomoya Ohtani | 0:09 | |
| 23 | Raphael's Daily Life | SEGA & Naofumi Hataya | 0:56 | |
| 24 | Moon Princess | SEGA & Naofumi Hataya | 2:08 | |
| 25 | Destroyer Diabolique | SEGA & Tomoya Ohtani | 1:24 | |
| 26 | Escape from Notre Dame | SEGA & Takahito Eguchi | 0:52 | |
| 27 | Sneaking and Entering | SEGA & Tomoya Ohtani | 2:11 | |
| 28 | Charlie Takes the Field | SEGA & Tomoya Ohtani | 1:48 | |
| 29 | Onward Through the Dark | SEGA & Naofumi Hataya | 1:44 | |
| 30 | Napoleon's Hideout | SEGA & Tomoya Ohtani | 1:41 | |
| 31 | Marie and the Duchess | SEGA & Takahito Eguchi | 0:54 | |
| 32 | Hurry Up and Wait | SEGA & Naofumi Hataya | 2:36 | |
| 33 | Phantom Fondue | SEGA & Tomoya Ohtani | 1:54 | |
| 34 | Throwdown with Alfred | SEGA & Naofumi Hataya | 2:31 | |
| 35 | Phantom from the Opera | SEGA & Naofumi Hataya | 2:05 | |
| 36 | Rematch with Charlie | SEGA & Tomoya Ohtani | 1:39 | |
| 37 | Show's Over, Folks! | SEGA & Takahito Eguchi | 0:49 | |
| 38 | Theme of Marie | SEGA & Takahito Eguchi | 0:55 | |
| 39 | Words of Encouragement | SEGA & Takahito Eguchi | 0:47 | |
| 40 | Cheering Marie | SEGA & Tomoya Ohtani | 2:01 | |
| 41 | Paris by Day Ver.2 | SEGA & Naofumi Hataya | 1:57 |
